Abstract Template
نویسندگان
چکیده
Recent studies show that certain nanomaterials (NMs) are toxic to living organisms, both in in vitro and in vivo studies. Main common mechanisms of toxicity, such as immunotoxicity, inflammation and increased production of oxygen reactive species which, in turn, provoke oxidative stress, have been already demonstrated for NMs. Nevertheless, specific mechanisms for different materials and key properties (i.e., solubility, size, shape) influencing toxicity remain to be elucidated. Toxicogenomics is a high throughput tool to investigate the molecular and cellular mechanisms of action of chemicals and other environmental stressors, including NMs, on biological systems, predicting toxicity before any functional damages, and allows classification of materials based on signatures of gene expression [1]. In this work, we studied the transcriptomic response in the liver of adult zebrafish (Danio rerio) exposed to 10 μg metal/L of CuO nanoparticles (NPs) of ~100 nm, maltose-coated Ag NPs of 20 nm and CdS quantum dots (QDs) of 3.5-4 nm, as well as to their ionic counterparts (CuCl2, AgNO3 or CdCl2). After 3 and 21 days of exposure, the liver of 20 males was dissected out and a microarray study was performed using the Agilent technology Zebrafish (v3), 4x44k Gene Expression Microarray. Copper exposures caused a weak effect on liver transcriptome compared to the response elicited by silver and cadmium compounds. CuO NPs differentially regulated 69 transcripts (LIMMA adjusted p<0.05 value) after 3 days of exposure while ionic copper significantly altered the expression of 30 transcripts after 21 days of exposure. Most of the GO terms (9 out of the 11) were shared in both treatments. General terms involving basic biological processes, such as “cellular process”, “single organism process”, “metabolic process”, “biological regulation” and “responses to stimulus” appeared enriched. Sequences related to “rhythmic process” were only regulated after 3 weeks of exposure to ionic copper. Exposure to silver for 3 days significantly regulated 243 different genes (Ag NPs) or 399 genes (ionic silver). After 21 days, the opposite trend was found: ionic silver regulated 265 transcripts and Ag NPs altered 990 different genes. At 3 days, ionic silver produced a strong disturbance of the energetic metabolism, inducing fatty acid catabolism, biosynthesis of unsatured fatty acids and peroxisome proliferator activated receptor signaling pathway and inhibiting glycolysis, among others. All these alterations did not remain after 21 days. Exposure for 3 days to Ag NPs inhibited steroid biosynthesis and induced fatty acid catabolism and several amino acids catabolism. After 21 days, pentose phosphate pathway, ether lipid metabolism, most of the amino acids metabolism and many ribosomal proteins were up-regulated. CdS QDs significantly regulated 9 and 3638 genes after 3 and 21 days, respectively, while the ionic form regulated 37 and 11224 genes. Both cadmium forms upregulated RNA degradation related biological processes after 21 days. In addition, ionic cadmium altered the DNA repair metabolism and down-regulated the carboxylic acid, alcohol and glycerol metabolic processes and amino acid and derivative metabolic processes, among others. QDs exposure inhibited actin cytoskeleton including focal adhesions and metabolism of carbohydrates and some amino acids, among others. Overall, these results show distinct gene transcription signatures for the three metals, being the nonessential metals, silver and cadmium, those eliciting the strongest response in the zebrafish liver. Copper only altered general biological processes. In addition, transcription profiles distinguished metal forms (NP versus ionic form) and exposure times (3 versus 21 days), appearing as an useful tool to unveil nano-specific mechanisms of toxicity. Funded by EU 7th FP (CP-FP 214478-2), Spanish MICINN and MINECO (CTM2009-13477 and MAT2012-39372), UPV/EHU (UFI 11/37), and Basque Government (IT810-13). Technical and human support provided by the UPV/EHU SGiker is acknowledged.
منابع مشابه
Polynomial Template Generation using Sum-of-Squares Programming
Template abstract domains allow to express more interesting properties than classical abstract domains. However, template generation is a challenging problem when one uses template abstract domains for program analysis. In this paper, we relate template generation with the program properties that we want to prove. We focus on one-loop programs with nested conditional branches. We formally defin...
متن کاملUsing Template Haskell for Abstract Interpretation
Metaprogramming consists of writing programs that generate or manipulate other programs. Template Haskell is a recent extension of Haskell, currently implemented in the Glasgow Haskell Compiler, giving support to metaprogramming at compile time. Our aim is to apply these facilities in order to statically analyse programs and transform them at compile time. In this paper we use Template Haskell ...
متن کاملTowards a Text Generation Template Language for Modelica
The uses, needs, and requirements of a text generation template language for Modelica are discussed. A template language may allow more concise and readable programming of the generation of textual models, program code, or documents, from a structured model representation such as abstract syntax trees (AST). Applications can be found in generating simulation code in other programming languages ...
متن کاملTemplate-Based Unbounded Time Verification of Affine Hybrid Automata
Computing over-approximations of all possible time trajectories is an important task in the analysis of hybrid systems. Sankaranarayanan et al. [20] suggested to approximate the set of reachable states using template polyhedra. In the present paper, we use a max-strategy improvement algorithm for computing an abstract semantics for affine hybrid automata that is based on template polyhedra and ...
متن کاملGeneration Mechanisms in Graphical Template Language
Textual models in MDD typically are generated in their concrete syntax using a template based language. On the contrary, graphical models as a rule are generated in abstract syntax and then visualized, which is not very efficient for complicated languages. The paper discusses a case of template based generation of graphical models in a concrete syntax. We apply this approach to generation of pr...
متن کاملTowards Automatic Generation of a Coherent TTCN-3 Template Framework
The template framework is a subset of TTCN-3 template declarations, which determines the entire template hierarchy within an abstract test suite. This paper introduces a deterministic method fortest suite. This paper introduces a deterministic method for generating such a template framework from type definitions.
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
دوره شماره
صفحات -
تاریخ انتشار 2014